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Migrate to git Aidbox Configuration Projects
November 2022 release of Aidbox comes with a couple of features to reduce the startup time when using FHIR IG packages. First, we prepared a new version for our distribution of those packages which allows for their more efficient load into the Aidbox. Second, for those using configuration projects, it is now possible to remount downloaded IGs.
Just update their version so that it is at least 0.6.0. You can see the latest version on the Releases page.
All urls associated with the
zen-lang/fhir GitHub repository should be removed. All standalone packages represented as zip archives have been migrated to the new zen-package format, now you can specify desired IG's via AIDBOX_ZEN_PACKAGE_LOAD environment variable or via zen-package.edn.Add a new environment variable
AIDBOX_ZEN_PACKAGE_LOAD="{:deps {hl7-fhir-us-core \"https://github.com/zen-fhir/hl7-fhir-us-core\"}}":deps should list all the IGs that were in AIDBOX_ZEN_PATHS but with their URLs changed to a corresponding repository from our list of packages repositories.If your
AIDBOX_ZEN_PATHS looks likeurl:zip:https://github.com/zen-lang/fhir/releases/download/0.5.13/hl7-fhir-us-core.zip,
url:zip:https://github.com/zen-lang/fhir/releases/download/0.5.13/hl7-fhir-us-carin-bb.zip
then
AIDBOX_ZEN_PACKAGE_LOAD should be equal to"
{:deps
{hl7-fhir-us-core \"https://github.com/zen-fhir/hl7-fhir-us-core\",
hl7-fhir-us-carin-bb \"https://github.com/zen-fhir/hl7-fhir-us-carin-bb\"}}
"
If you have urls pointing to IGs hosted outside the
zen-lang/fhir repo, you should also remove them, recompile those IGs into zen-packages and store them on a filesystem or any git repo server.Compile IG to zen-package. Download zen-fhir.jar CLI utility, which can be found there under following name pattern zen-fhir-<release-tag>-standalone.jar.
Create and open directory:
mkdir zen-profiling && cd zen-profiling && mkdir output
Get the tarball link for the desired IG, in this example we will use hl7.fhir.us.davinci-pdex@latest, although it is already presented in the zen-packages gallery. This step is unnecessary if you already have a folder containing the IG and its dependencies:
npm --registry https://packages.simplifier.net view hl7.fhir.us.davinci-pdex@latest
Copy resulting tarball link and install this IG:
npm --registry https://packages.simplifier.net install https://packages.simplifier.net/hl7.fhir.us.davinci-pdex/2.0.0-ballot
Convert downloaded IGs to zen-packages if you want to process each provided IG omit
-m option, but if you provide additional IGs as dependencies, select the main package (via -m option) to which all transformations will be applied:java -jar -Xmx8g ~/Downloads/zen-fhir.jar ig-to-zenpackage -i node_modules -o output -m hl7.fhir.us.davinci-pdex
You can store resulting repo on a file system or any git repository servers (e.g. Github, Gitlab, etc.)
List such dependencies using
AIDBOX_ZEN_PACKAGE_LOAD:"
{:deps
{hl7-fhir-us-davinci-pdex \"path/to/git/repo/hl7.fhir.us.davinci-pdex"}}
"
In this guide you will find instructions on how to create zen-packages and how to store/import your zen-configs. As a result, you will get a zen-package that can be stored on a filesystem or git repo server, so you can easily declare this package as a dependency in your
AIDBOX_ZEN_PACKAGE_LOAD or BOX_PROJECT_GIT_TARGET__PATH.Last modified 2mo ago