How to run Aidbox in GCP Cloud Run

Objectives

• Run the Aidbox container in the GCP Cloud Run environment using Cloud SQL as a database.

Before you begin

• You must have an active Google Cloud account. More information here.

Create a Managed PostgreSQL Database

1. Log in to Google Cloud Console, go to SQL Service, and create a new Cloud SQL instance.

   
2. Choose PostgreSQL for the database engine

   
3. Choose Enterprise Cloud SQL Edition and "Sandbox" edition preset

   
4. Enter the required parameters.

   

   5. Configure the private IP access to the database instance.

Restricting database access at the network level is a recommended security best practice. In this tutorial, we take a simple approach by allowing access from the default VPC network and configuring Cloud Run to use the same network for outbound connections. For production environments, we strongly encourage implementing more granular and restrictive network policies tailored to your security needs.

In the "Customize your Instance -> Connections" section, enable the "Private IP" option and disable the "Public IP" option.

6. Click the "Create Instance" button and wait until the instance is created.

Create a database and a user for the Aidbox service

1. Open Cloud SQL Studio.

   
2. Connect to the postgres database with the username postgres and the password you've chosen when you created the database.

   
3. Create the database and user for the Aidbox. Run the following statements one by one in Cloud SQL Studio Editor

   -- 1. Create the user (and a role) for Aidbox
   CREATE USER aidbox WITH PASSWORD '<your password for aidbox user>';
   -- 2. Grant the role aidbox to postgres, because postgres is not a superuser
   -- in Google Cloud SQL. 
   -- It's required to execute the following ALTER DATABASE statement
   GRANT aidbox TO postgres;
   -- 3. Create the database for Aidbox owned by the aidbox user
   CREATE DATABASE aidbox OWNER aidbox;

During initialization, Aidbox creates certain database extensions. You can find more details here. If you prefer not to grant the Aidbox user the permissions required for this, you can pre-create the necessary extensions using a privileged user and disable automatic extension creation via settings. This is the approach we follow in the current tutorial.

1. Connect to the database aidbox , that you've created using user postgres, and create the extension.

CREATE EXTENSION pg_stat_statements;

Create the service for Aidbox in Cloud Run

1. Navigate to the "Cloud Run" section in the Google Cloud Console and create a new service from the container .

   
2. Enter healthsamurai/aidboxone:edge as a container image URL and add a service name.

   
3. Disable authentication.

   
4. Set Auto scaling to 1 and leave other properties by default.

   
5. Configure Memory and CPU Limits

   
6. In the container properties, add environment variables.

   

   Add the following environment variables:

   - name: BOX_SECURITY_AUDIT_LOG_ENABLED
     value: true
   - name: BOX_FHIR_SCHEMA_VALIDATION
     value: true
   - name: BOX_DB_PORT
     value: 5432
   - name: BOX_WEB_PORT
     value: 8080
   - name: BOX_SECURITY_DEV_MODE
     value: true
   - name: BOX_BOOTSTRAP_FHIR_PACKAGES
     value: hl7.fhir.r4.core#4.0.1
   - name: BOX_DB_DATABASE
     value: aidbox
   - name: BOX_FHIR_CREATEDAT_URL
     value: https://aidbox.app/ex/createdAt
   - name: BOX_ROOT_CLIENT_SECRET
     value: <put the default API client secret here>
   - name: BOX_FHIR_CORRECT_AIDBOX_FORMAT
     value: true
   - name: BOX_SETTINGS_MODE
     value: read-write
   - name: BOX_DB_USER
     value: aidbox
   - name: BOX_FHIR_COMPLIANT_MODE
     value: true
   - name: BOX_FHIR_SEARCH_COMPARISONS
     value: true
   - name: BOX_COMPATIBILITY_VALIDATION_JSON__SCHEMA_REGEX
     value: #{:fhir-datetime}
   - name: BOX_FHIR_TERMINOLOGY_SERVICE_BASE_URL
     value: https://tx.health-samurai.io/fhir
   - name: BOX_DB_HOST
     value: <put your PostgreSQL internal IP here>
   - name: BOX_FHIR_SEARCH_AUTHORIZE_INLINE_REQUESTS
     value: true
   # See https://cloud.google.com/run/docs/triggering/https-request#deterministic  
   # for more info about deterministic URLs
   - name: BOX_WEB_BASE_URL
     value: <put your deterministic URL here>
   - name: BOX_DB_PASSWORD
     value: <put the password of aidbox database user here>
   - name: BOX_ADMIN_PASSWORD
     value: <put the password of aidbox built-in admin user here>
   - name: BOX_SEARCH_INCLUDE_CONFORMANT
     value: true
   - name: BOX_DB_INSTALL_PG_EXTENSIONS
     value: false
   - name: BOX_DB_MAINTENANCE_DATABASE
     value: aidbox
   - name: JAVA_OPTS
     value: -Xms3072m -Xmx3072m  

   See more about recommended Aidbox environment variables here.

   
7. At the Networking tab, configure the outbound traffic to go to the default subnet.

   
8. Click the "Create" button and wait for the service to deploy successfully.

1. Access the service via the URL.

1. Activate the Aidbox instance.

What's next

See more about different options for running Aidbox:

• Deploy Aidbox with Helm charts
• Run Aidbox locally